PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020185-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 95aa    MW: 10643.9 Da    PI: 9.3975
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020185-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.25.2e-0722611554
                        HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                        +i +  ++L++l+P+ + + +s  +s + +L+++++YI+sL
  WALNUT_00020185-RA 22 QIADLVSKLQQLIPEiR-NRRSDTVSASKVLQETCNYIRSL 61
                        6888999********77.788999***************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-82179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-42261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-72275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MSSRRSRSRQ QTGASRNITD EQIADLVSKL QQLIPEIRNR RSDTVSASKV LQETCNYIRS  60
LHREVDDLSD RLSGLLATTD TDSAQAAIIR SLLSQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007226915.14e-46hypothetical protein PRUPE_ppa016030mg
SwissprotQ8GW321e-38PRE6_ARATH; Transcription factor PRE6
TrEMBLA0A151RGX82e-47A0A151RGX8_CAJCA; Transcription factor bHLH135 family
STRINGVIT_01s0026g02030.t011e-42(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.18e-40bHLH family protein